Introduction | Glossary | Data: Atlantic salmon parr distribution | Calculations | Function genSEF | Function getMinMSE | Objective function for parameter search | Building models for channel depth, current velocity, and substrate grain size | Channel depth | Current velocity | Substrate grain size | Atlantic salmon parr abundance | References

Introduction | The Phylogenetic eigenvector maps (PEM) expression | Preparing the data | Calculating PEM | Edge weighting function | Phylogenetic graph | Building the eigenvector map | Heterogeneous evolutionary process | Estimate weighting parameters empirically | Prediction scores | Phylogenetic modelling | Making predictions | Cross-validation of PEM predictions | Other utility functions | Influence matrix | Update and a PEM with new parameters | References