Package: codep 1.2-3

codep: Multiscale Codependence Analysis

Computation of Multiscale Codependence Analysis and spatial eigenvector maps.

Authors:Guillaume Guenard and Pierre Legendre, Bertrand Pages

codep_1.2-3.tar.gz
codep_1.2-3.zip(r-4.5)codep_1.2-3.zip(r-4.4)codep_1.2-3.zip(r-4.3)
codep_1.2-3.tgz(r-4.4-x86_64)codep_1.2-3.tgz(r-4.4-arm64)codep_1.2-3.tgz(r-4.3-x86_64)codep_1.2-3.tgz(r-4.3-arm64)
codep_1.2-3.tar.gz(r-4.5-noble)codep_1.2-3.tar.gz(r-4.4-noble)
codep_1.2-3.tgz(r-4.4-emscripten)codep_1.2-3.tgz(r-4.3-emscripten)
codep.pdf |codep.html✨
codep/json (API)

# Install 'codep' in R:
install.packages('codep', repos = c('https://guenardg.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/guenardg/codep/issues

Datasets:

On CRAN:

3.15 score 28 scripts 606 downloads 1 mentions 22 exports 0 dependencies

Last updated 7 months agofrom:215f84947c. Checks:OK: 4 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-win-x86_64NOTENov 11 2024
R-4.5-linux-x86_64NOTEOct 12 2024
R-4.4-win-x86_64NOTENov 11 2024
R-4.4-mac-x86_64NOTENov 11 2024
R-4.4-mac-aarch64NOTENov 11 2024
R-4.3-win-x86_64OKNov 11 2024
R-4.3-mac-x86_64OKNov 11 2024
R-4.3-mac-aarch64OKNov 11 2024

Exports:cthresholddphidtaueigenmapeigenmap.scoreEuclidgeodesicsLGTransformsMCAminpermuteparPermute.cdppermute.cdppphiptautest.cdpwf.binarywf.Drayf1wf.Drayf2wf.Drayf3wf.PCNMwf.RBFwf.sqrd

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Multiscale Codependence Analysiscodep-package
Class and Methods for Multiscale Codependence Analysis (MCA)cdp-class fitted.cdp plot.cdp predict.cdp print.cdp residuals.cdp summary.cdp
Familywise Type I Error Ratecthreshold
The Doubs Fish DataDoubs Doubs.env Doubs.fish Doubs.geo
Spatial Eigenvector Mapseigenmap eigenmap.score
Class and Methods for Spatial Eigenvector Mapseigenmap-class plot.eigenmap print.eigenmap
Calculation of the Euclidean DistanceEuclid
Calculation of Geodesic Distancesgeodesics
Legendre and Gallagher Synthetic ExampleLGDat
Transformation for Species Abundance DataLGTransforms
Multiple-descriptors, Multiscale Codependence AnalysisMCA parPermute.cdp permute.cdp test.cdp
Number of Permutations for MCAminpermute
The Oribatid Mite Data Setmite mite.env mite.geo mite.species
Frequency Distributions for MCA Parametric Testingdphi dtau pphi product-distribution ptau
The St. Marguerite River Altantic Salmon Parr Transectsalmon
Weighting Functions for Spatial Eigenvector Mapweighting-functions wf.binary wf.Drayf1 wf.Drayf2 wf.Drayf3 wf.PCNM wf.RBF wf.sqrd